📄 En¶

This dataset is a subset of a training dataset by the BioASQ Challenge, which is available here.

It is derived from rag-datasets/rag-mini-bioasq.

Modifications include:

filling in missing passages (some of them contained “nan” instead of actual text), changing relevant_passage_ids’ type from string to sequence of ints, deduplicating the passages (removed 40 duplicates) and fixing the relevant_passage_ids in QAP triplets to point to the corrected, deduplicated passages’ ids, splitting QAP triplets into train and test splits.

Tags: license:cc-by-2.5, category:dataset

cards.rag.documents.bioasq.en

type: TaskCard
loader: 
  type: LoadHF
  path: enelpol/rag-mini-bioasq
  name: text-corpus
  data_classification_policy: 
    - public
preprocess_steps: 
  - type: RenameSplits
    mapper: 
      test: train
  - type: Cast
    field: id
    to: str
  - type: Copy
    field: id
    to_field: document_id
  - type: Wrap
    field: passage
    inside: list
    to_field: passages
  - type: Set
    fields: 
      metadata_field: 
      title: 
task: tasks.rag.corpora
templates: 
  empty: 
    type: InputOutputTemplate
    input_format: 
    output_format: 
[source]

Explanation about TaskCard¶

TaskCard delineates the phases in transforming the source dataset into model input, and specifies the metrics for evaluation of model output.

Args:

loader:
specifies the source address and the loading operator that can access that source and transform it into a unitxt multistream.

preprocess_steps:
list of unitxt operators to process the data source into model input.

task:
specifies the fields (of the already (pre)processed instance) making the inputs, the fields making the outputs, and the metrics to be used for evaluating the model output.

templates:
format strings to be applied on the input fields (specified by the task) and the output fields. The template also carries the instructions and the list of postprocessing steps, to be applied to the model output.

default_template:
a default template for tasks with very specific task dataset specific template

Explanation about Copy¶

Copies values from specified fields to specified fields.

Args (of parent class):
field_to_field (Union[List[List], Dict[str, str]]): A list of lists, where each sublist contains the source field and the destination field, or a dictionary mapping source fields to destination fields.

Examples:
An input instance {“a”: 2, “b”: 3}, when processed by Copy(field_to_field={"a": "b"}) would yield {“a”: 2, “b”: 2}, and when processed by Copy(field_to_field={"a": "c"}) would yield {“a”: 2, “b”: 3, “c”: 2}

with field names containing / , we can also copy inside the field: Copy(field="a/0",to_field="a") would process instance {“a”: [1, 3]} into {“a”: 1}

Explanation about Set¶

Sets specified fields in each instance, in a given stream or all streams (default), with specified values. If fields exist, updates them, if do not exist – adds them.

Args:
fields (Dict[str, object]): The fields to add to each instance. Use ‘/’ to access inner fields

use_deepcopy (bool) : Deep copy the input value to avoid later modifications

Examples:
# Set a value of a list consisting of “positive” and “negative” do field “classes” to each and every instance of all streams Set(fields={"classes": ["positive","negatives"]})

# In each and every instance of all streams, field “span” is to become a dictionary containing a field “start”, in which the value 0 is to be set Set(fields={"span/start": 0}

# In all instances of stream “train” only, Set field “classes” to have the value of a list consisting of “positive” and “negative” Set(fields={"classes": ["positive","negatives"], apply_to_stream=["train"]})

# Set field “classes” to have the value of a given list, preventing modification of original list from changing the instance. Set(fields={"classes": alist}), use_deepcopy=True) if now alist is modified, still the instances remain intact.

Explanation about InputOutputTemplate¶

Generate field ‘source’ from fields designated as input, and fields ‘target’ and ‘references’ from fields designated as output, of the processed instance.

Args specify the formatting strings with which to glue together the input and reference fields of the processed instance into one string (‘source’ and ‘target’), and into a list of strings (‘references’).

Explanation about LoadHF¶

Loads datasets from the HuggingFace Hub.

It supports loading with or without streaming, and it can filter datasets upon loading.
Args:

path:
The path or identifier of the dataset on the HuggingFace Hub.

name:
An optional dataset name.

data_dir:
Optional directory to store downloaded data.

split:
Optional specification of which split to load.

data_files:
Optional specification of particular data files to load.

revision:
Optional. The revision of the dataset. Often the commit id. Use in case you want to set the dataset version.

streaming (bool):
indicating if streaming should be used.

filtering_lambda (str, optional):
A lambda function for filtering the data after loading.

num_proc (int, optional):
Specifies the number of processes to use for parallel dataset loading.

Example:
Loading glue’s mrpc dataset
load_hf = LoadHF(path='glue', name='mrpc')

Explanation about Cast¶

Casts specified fields to specified types.

Args:
default (object): A dictionary mapping field names to default values for cases of casting failure. process_every_value (bool): If true, all fields involved must contain lists, and each value in the list is then casted. Defaults to False.

References: tasks.rag.corpora